{"id":484,"date":"2014-06-25T11:18:38","date_gmt":"2014-06-25T16:18:38","guid":{"rendered":"http:\/\/bitc.bme.emory.edu\/~lzhou\/blogs\/?p=484"},"modified":"2014-07-17T10:57:33","modified_gmt":"2014-07-17T15:57:33","slug":"install-python-nipype","status":"publish","type":"post","link":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/?p=484","title":{"rendered":"install python nipype"},"content":{"rendered":"<p>make sure \/usr\/bin\/as and \/usr\/bin\/strip are the latest version.<br \/>\ncd where_python_downloads_are.<br \/>\nyum install python27-python-devel-2.7.5-7.el6.centos.alt.x86_64.rpm python27-python-libs-2.7.5-7.el6.centos.alt.x86_64.rpm python27-python-2.7.5-7.el6.centos.alt.x86_64.rpm python27-runtime-1-10.el6.centos.alt.x86_64.rpm python27-python-setuptools-0.6.28-7.el6.centos.alt.noarch.rpm<br \/>\nexport PATH=\/usr\/lib64\/qt5\/bin:\/opt\/rh\/python27\/root\/usr\/bin:\/usr\/local\/sbin:\/usr\/local\/bin:\/sbin:\/bin:\/usr\/sbin:\/usr\/bin<br \/>\nexport LD_LIBRARY_PATH=\/opt\/rh\/python27\/root\/usr\/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}<br \/>\nexport MANPATH=\/opt\/rh\/python27\/root\/usr\/share\/man:${MANPATH}<br \/>\nyum install blas-devel lapack-devel<br \/>\neasy_install-2.7 numpy<br \/>\neasy_install-2.7 nibabel<br \/>\neasy_install-2.7 networkx<br \/>\neasy_install-2.7 mercurial<br \/>\neasy_install-2.7 scipy<br \/>\neasy_install-2.7 traits<br \/>\neasy_install-2.7 nipype<\/p>\n<p>easy_install-2.7 pip<br \/>\npip install python-dateutil<br \/>\npip install configobj<br \/>\npip install nose<\/p>\n<p>cd [sip]<br \/>\nmake install<br \/>\nyum install qt5-qtbase-devel qt5-qtbase-postgresql qt5-qtbase-odbc qt5-qtbase-gui qt5-qtbase qt5-qtbase-mysql<br \/>\ncd [PyQt]<br \/>\npython2.7 configure-ng.py<br \/>\nadd &#8220;-Xlinker -zmuldefs&#8221; in the LFLAGS line of [PyQt]\/QtCore Makefile<br \/>\nmake<br \/>\nmake install<br \/>\ncd [pathmap]<br \/>\npython2.7 setup.py install<br \/>\ncd [filer]<br \/>\npython2.7 setup.py install<\/p>\n<p># The following will install and test the dcmstack package<br \/>\npip install sphinx<br \/>\npip install numpydoc<br \/>\npip install mock<br \/>\ncd [dcmstack\/dcmstack-master\/doc]<br \/>\nmake html<br \/>\npython2.7 setup.py install<br \/>\npython2.7 setup.py test<br \/>\nnosetests<\/p>\n","protected":false},"excerpt":{"rendered":"<p>make sure \/usr\/bin\/as and \/usr\/bin\/strip are the latest version. cd where_python_downloads_are. yum install python27-python-devel-2.7.5-7.el6.centos.alt.x86_64.rpm python27-python-libs-2.7.5-7.el6.centos.alt.x86_64.rpm python27-python-2.7.5-7.el6.centos.alt.x86_64.rpm python27-runtime-1-10.el6.centos.alt.x86_64.rpm python27-python-setuptools-0.6.28-7.el6.centos.alt.noarch.rpm export PATH=\/usr\/lib64\/qt5\/bin:\/opt\/rh\/python27\/root\/usr\/bin:\/usr\/local\/sbin:\/usr\/local\/bin:\/sbin:\/bin:\/usr\/sbin:\/usr\/bin export LD_LIBRARY_PATH=\/opt\/rh\/python27\/root\/usr\/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}} export MANPATH=\/opt\/rh\/python27\/root\/usr\/share\/man:${MANPATH} yum install blas-devel lapack-devel easy_install-2.7 numpy easy_install-2.7 nibabel easy_install-2.7 networkx easy_install-2.7 mercurial easy_install-2.7 scipy easy_install-2.7 traits easy_install-2.7 nipype easy_install-2.7 pip pip install python-dateutil pip install configobj pip install nose cd [sip] [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[21,3],"tags":[],"class_list":["post-484","post","type-post","status-publish","format-standard","hentry","category-computer-tips","category-mri-technical-support","post-blog"],"_links":{"self":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts\/484","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=484"}],"version-history":[{"count":13,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts\/484\/revisions"}],"predecessor-version":[{"id":505,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts\/484\/revisions\/505"}],"wp:attachment":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=484"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=484"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=484"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}