{"id":616,"date":"2018-04-13T18:28:12","date_gmt":"2018-04-13T23:28:12","guid":{"rendered":"http:\/\/csic.som.emory.edu\/~lzhou\/blogs\/?p=616"},"modified":"2018-04-13T18:28:12","modified_gmt":"2018-04-13T23:28:12","slug":"install-linda-for-r","status":"publish","type":"post","link":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/?p=616","title":{"rendered":"Install LINDA for R"},"content":{"rendered":"

under su:
\nmkdir ~\/.R
\necho “CPPFLAGS=-fpermissive” >> ~\/.R\/Makevars
\nln -s \/location\/of\/LINDA \/usr\/local\/
\nR
\nin “R”:
\ninstall.packages(“Rcpp”)
\ninstall.packages(“magrittr”)
\ninstall.packages(“drat”)
\ndrat::addRepo(“ANTs-R”)
\ninstall.packages(“ANTsR”)
\ninstall.packages(“randomForest”)
\nsource(‘\/usr\/local\/LINDA\/linda_predict.R’)
\nq()<\/p>\n","protected":false},"excerpt":{"rendered":"

under su: mkdir ~\/.R echo “CPPFLAGS=-fpermissive” >> ~\/.R\/Makevars ln -s \/location\/of\/LINDA \/usr\/local\/ R in “R”: install.packages(“Rcpp”) install.packages(“magrittr”) install.packages(“drat”) drat::addRepo(“ANTs-R”) install.packages(“ANTsR”) install.packages(“randomForest”) source(‘\/usr\/local\/LINDA\/linda_predict.R’) q()<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[21,3],"tags":[],"class_list":["post-616","post","type-post","status-publish","format-standard","hentry","category-computer-tips","category-mri-technical-support","post-blog"],"_links":{"self":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts\/616","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=616"}],"version-history":[{"count":1,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts\/616\/revisions"}],"predecessor-version":[{"id":617,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=\/wp\/v2\/posts\/616\/revisions\/617"}],"wp:attachment":[{"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=616"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=616"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/csic.som.emory.edu\/~lzhou\/blogs\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=616"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}